Fiji/ImageJ

Fiji is an image processing package — a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis. More Downloads Cite Contribute Fiji is easy to use and install - in one-click, Fiji installs all of its plugins, features an automatic updater, and offers comprehensive documentation. Fiji bundles together many popular and useful ImageJ plugins for image analysis into one installation, and automatically manages their dependencies and updating. Like ImageJ itself, Fiji is an open source project hosted on GitHub, developed and written by the community. Fiji features thousands of plugins that aid in scientific image processing and analysis. Here are a few featured plugins hand-picked by the Fiji community - refresh the page to see different plugins! Combines TrackMate and BigDataViewer for browsing, annotating, and curating annotations for large image data. A collection of machine learning algorithms with a set of selected image features to produce pixel-based segmentations. Pixel intensity correlation over space methods of Pearson, Manders, Costes, Li and more, for scatterplots, analysis, automatic thresholding and statistical significance testing. Easy to use manual and automated segmentation of microscopy image data. Create high-quality 3D/4D animations using a natural-language based syntax. Fiji is developed by contributors around the world, and funded from various sources. It is maintained by the Eliceiri/LOCI group at the University of Wisconsin-Madison, the Jug group at Human Technopole in Milan, and Tomancak lab at the MPI-CBG in Dresden. Fiji is an open source project, so everybody is welcome to contribute with plugins, patches, bug reports, tutorials, documentation, and artwork. Fiji is licensed under the GNU General Public License. It builds on top of the ImageJ2 core, which is licensed under the permissive BSD 2-clause license. Plugins